3300002559: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-5-D

Overview

Basic Information

• IMG/M Taxon OID: 3300002559
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0061317 | Ga0006568
• Sample Name: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-5-D
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 92370238
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000255	Metagenome / Metatranscriptome	1449	Y
F000412	Metagenome / Metatranscriptome	1169	Y
F001784	Metagenome / Metatranscriptome	635	Y
F004068	Metagenome / Metatranscriptome	454	Y
F013855	Metagenome / Metatranscriptome	267	Y
F028398	Metagenome / Metatranscriptome	191	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI25330J36431_1000425	All Organisms → cellular organisms → Bacteria → Proteobacteria	15942
JGI25330J36431_1011908	Not Available	1187
JGI25330J36431_1021704	Not Available	763
JGI25330J36431_1024420	Not Available	699
JGI25330J36431_1033397	Not Available	558

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25330J36431_1000425	JGI25330J36431_10004259	F001784	MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAAHKGIQVAMMHSVEALMNSIYDLCTSKLQQPEL*
JGI25330J36431_1011908	JGI25330J36431_10119081	F028398	MVQNAPKHYETHQNMSLRSDGVDRVDLLQKILTQLCGLNFCINYNSSARVEPSIVKQR
JGI25330J36431_1011908	JGI25330J36431_10119082	F004068	MGWIGCVRCENIQRDFVAQTFALIAPVQPILHRVSCSNKMVSNAPKPYETQQNMSLGSDGMDSVDLLQKILTQLCGLNFCINYNSSARFEASIVKQRNGPKCTQTLRNKTKHEFRVQWGGSGAFVAKNSDTTSWDELLHYLH*
JGI25330J36431_1021704	JGI25330J36431_10217041	F013855	MHPNTMKRNKR*VWGPXGSIGCVRCENIRRDFVARTFALIAPVRPILHRVYCRNKMLPNAPKHYETHHNMSLGSDAVDWADLLQRILLQLCGLNFCFNCNSSA*FEPSIVNQRNGPKCTQTLRNKTKHDFRFQWGWISCIRCEKFGNDFVA*TFALIAPVQPISHRVSCSNEMVPNAPKHYET*
JGI25330J36431_1024420	JGI25330J36431_10244201	F000412	LIDLL*AGGSVAPAQPTSLR*N*GIFAQTCSTCLEGPYRKDSSGAHPCRAIDRA*EPRIPSPCSLKAITHATGSKIGSSRSRWNRGTEYYPVGMKTHIEYPDIFF*KYNSPYHIEMGTYILIDLL*AGGSVAPAQPTSLR*N*GIFAQTCSTCLEGPYRKDSSGAHPCRAIDRA*EPRIPSPCSLKAITHATGSKIGSSRSRWNRGTEYYPVGMKTHIEYPDIFF*KYNSPY
JGI25330J36431_1033397	JGI25330J36431_10333971	F000255	MGWIGCVRREKSRRDFVARAFALIALVHPVLHRVSCGYETIPNAPKHYAMHQNMSLRSKGVDWVRSVQKIPT*