Scaffold JGI25385J37094_10000030

Overview

Basic Information

• Taxon OID: 3300002558
• Scaffold ID: JGI25385J37094_10000030
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21710
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014723	Metagenome	260	N
F023077	Metagenome	211	N
F041118	Metagenome	160	N
F071058	Metagenome	122	N
F099704	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25385J37094_1000003011	F023077	N/A	MMTAMALLVSPVYPATMNPQENVNLYTGNKLIVQSNQASIKSVVVRGNLSAATLSSNAYPSKNFTLTTNSTQLYTVDLLLSYQSPYTSEIVISDPYSGSMTQYTSYFVSGGDLNVTIFASFQAAPSAGPTAPLGWSSFYGWVSQFGGAFPLWIKILYTVLGAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKIYLWTEVVFRTLIAGFAISLAIMIGEVLXLLIAQYLLFVNLNLISLVDFFSIFFVAALGTLVYLTREGLERIFDLKPIMED*
JGI25385J37094_1000003012	F014723	GGAG	LSEQYHRLFLRWEVLRGWIPAIIFAAICVSLELLFFYNTLNTGFVDKTVSIPIGKWTLPISIALFLTLGNALVVVTLWMNVFESTAYVKAGPDKQVRRILYPLRMIRTAALVLAPFTIILFAPYIVEADWFVNAVASIQAFKPTTESFYNWAFNVSQIDGATRFIISQMIAALGALIIAGLQLWRVKGTKNLVRAFQRRK*
JGI25385J37094_1000003014	F099704	N/A	MPDQTNAWKIRVRKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
JGI25385J37094_1000003016	F071058	AGGAG	VNRDLTLEQVEMLDEMLKKLGLKDTTKVTLHDQQPRRVRPQRASHPIKPPIPESNQHNVPSEVRGSQTSAS*
JGI25385J37094_100000308	F041118	AGGAG	MTRLSFELVDPNSGEGASAEAVVDQKLIEDLNSYRSQGSTGKAFLIWIDTVKGEVSWQLRKIPDPFE*