Scaffold JGI25381J37097

Basic Information
Taxon OID	3300002557 Open in IMG/M
Scaffold ID	JGI25381J37097_1000208 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002557 Open in IMG/M

Scaffold ID

JGI25381J37097_1000208 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7197
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7197

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (54.55%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002975	Metagenome / Metatranscriptome	516	Y
F005263	Metagenome / Metatranscriptome	406	Y
F030030	Metagenome / Metatranscriptome	186	Y
F042845	Metagenome / Metatranscriptome	157	Y
F046962	Metagenome / Metatranscriptome	150	Y
F061700	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25381J37097_100020810	F061700	N/A	MCDKCHRFFVISYEKNEKGEVVEIGHELDIRVKSSGIVRLDEGEHPRGSERTPPVRKYEEETCW*
JGI25381J37097_10002082	F005263	N/A	LERRTRRTFTIDPDVSEKIDKMVGGHNLEVNVLVNRAIRRYIEWGRYVDSFKLVTSDPRLMKTLWSHVTVGEAREMGTKNGKDTVVEFILYYFRKFDLDSVLKTFEVIGAEYANAYVYSEFGDKDSRTIILRHSMGLSASAYYGASFKALCDRLGVKCELEESEDQMTCKISSASTLXTVAPKTLKEQLTKQS*
JGI25381J37097_10002084	F046962	N/A	LEETANVGYPPDTPSQTVPQDTMTDXQLKGLLAELISSSASLNVRVWLDGVYTDIENAGTHREWMKGREVYFKVEGKVDGQNSPEEAASRRA*
JGI25381J37097_10002085	F042845	AGGAGG	MENRKWKAFLRMTGETTVDASEDILTEFKAMVEYLKWIGVDYSMVVQVEAGQTDPSRTLASEQTPRRREPGQLED*
JGI25381J37097_10002086	F030030	AGAAG	MAKFIMSIGENAYDILSNEAKNRDVTVQQLLRAVVVPDWIKQNSNGQPIGENDSNLLQPPIYGGESRNSRTLVSPVARLRH*
JGI25381J37097_10002087	F002975	GGAG	LADFCSRCGKTLSLIDPLLELKGQRFCEDCYPDVKREHAAASMSDKVDRRQRVAFADDSSDENLRGSIIKGKQALAVKENEFRWDNPSLSLIASALRILTDQNNIMMKQNELILRELESRPTTVKSK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25381J37097_1000208

Overview

Ecosystem & Geography

Associated Families

Sequences