Scaffold JGI24927J35514_1001427

Overview

Basic Information

• Taxon OID: 3300002524
• Scaffold ID: JGI24927J35514_1001427
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2867
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046311	Metagenome	151	Y
F056584	Metagenome	137	Y
F074735	Metagenome / Metatranscriptome	119	N
F077338	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24927J35514_10014273	F077338	AGGA	MDKKVLQVVNLAPSESWIEKLVEVHPMKQITYAAIVQVVVFFSMLGAFQINTWIFSA*
JGI24927J35514_10014275	F046311	GGAG	MRTPRQQKNHENLQKQKQRLIRYLNENEMIVFFLLGLSILVMVGALAIATA*
JGI24927J35514_10014276	F056584	AGGAG	MATLTISSETNPGVVVLKGKMAWIQKRAWAYRNKGFNVLITWEQK*
JGI24927J35514_10014277	F074735	AGG	MNEKKLNKKELLEAIESYEKMIRNESLMKTFTKHMRGAFVVRLGRLNAELKRRK*