Scaffold FJ528644_10000026

Overview

Basic Information

• Taxon OID: 3300002516
• Scaffold ID: FJ528644_10000026
• Source Dataset Name: Host associated Microbial communities of an Orange Tunicate from Islas Murcielagos, Costa Rica -Sample 27904
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59527
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (36.62%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Orange Tunicate → Orange Tunicate Microbial Communities From Islas Murcielagos, Costa Rica

Source Dataset Sampling Location

• Location Name: Costa Rica
• Coordinates
  • Lat. (^o): 10.854298
  • Long. (^o): -85.931692

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055778	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
FJ528644_1000002649	F055778	N/A	MLSKVDFPEPELPTIRTISPCSTDKVALSSAFTLFSSSP*