Scaffold JGI25131J35506_1005866

Overview

Basic Information

• Taxon OID: 3300002511
• Scaffold ID: JGI25131J35506_1005866
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1734
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F051207	Metagenome / Metatranscriptome	144	Y
F103414	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25131J35506_10058662	F051207	N/A	MASSIYIYTNIQDYENLYKGKQEAYTYETPIIDLFIRPTEGYDVADSIPTNKLWVITQTDKVKMRPSLERTIVHFSNGTCFDFCSGGELQVEKEKVFYNPKNNQLEFYPRTLRRPLLSLKVDKVVGGKPTKKSKIRFKNKYYDMTHDRLNLFV*
JGI25131J35506_10058663	F103414	AGG	LSSFIFRAAGFSEIVSLLKETNQRLKNLERLLEFTLSPPDLSKYKKGMSLDDIPRMKLSEAGNPSDQA*
JGI25131J35506_10058665	F001235	N/A	TGGLDIGKKLWARHQADEYTHVDNYKEAICINCFKKDATAATIADICADCAGKRGREPLLATVTQKMYGLCFFCGKHKFNIEQINARFCRRCHRKIANVTKEYNKKGGMFKADPFWISMRKKMGKDWKEIMNKNLGNRR*