Scaffold TOLCLC_10125391

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold TOLCLC_10125391

Scaffold TOLCLC_10125391

Overview

Basic Information
Taxon OID	3300002498 Open in IMG/M
Scaffold ID	TOLCLC_10125391 Open in IMG/M
Source Dataset Name	Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	McGill University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3097
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location Name	Northern Alberta, Canada
Coordinates	Lat. (^o)	54.0	Long. (^o)	-114.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019675	Metagenome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
TOLCLC_101253911	F019675	N/A	LGMRRTRQTIAIVTGLLGVLLIVRGVAGGVWPLSLQLIAGVALVVVAVLRWRMLG*

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