Basic Information | |
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Taxon OID | 3300002498 Open in IMG/M |
Scaffold ID | TOLCLC_10000075 Open in IMG/M |
Source Dataset Name | Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | McGill University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21741 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (54.29%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Northern Alberta, Canada | |||||||
Coordinates | Lat. (o) | 54.0 | Long. (o) | -114.0 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F029922 | Metagenome / Metatranscriptome | 187 | Y |
F053881 | Metagenome / Metatranscriptome | 140 | N |
F070633 | Metagenome / Metatranscriptome | 123 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
TOLCLC_1000007533 | F029922 | GAGG | LEKSIEFIDKKDWEMLPMLSREELYGFEIFDISEMIMSIEHAIDYTEGYRFLFLCFGSEESSEKAKAVMKILEDYLQIVKDVYRFKMAEKKKRENFLKGVNA* |
TOLCLC_100000754 | F070633 | AGGA | VSHYLQLGPNKCKGDYNLVVVPISDGILTSIERDNFSIAMDTEGRLILTRKDRKVQLVFDYEKGFMTGVLGGILYDTFEIPKQEGTDYHG* |
TOLCLC_100000755 | F053881 | N/A | MSGLLKISKESLGEKERKLYLKLYKHIIESFEIDELAADQIALALISQKCILLPRLLSGEDIDINQTSESIRKWLAEYRLTPKSREKEKEVTINLSAIIEEIHRERDNPN* |
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