Scaffold JGI25128J35275_1000336

Overview

Basic Information

• Taxon OID: 3300002488
• Scaffold ID: JGI25128J35275_1000336
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14661
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (75.47%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F018286	Metagenome	236	Y
F019158	Metagenome	231	Y
F031249	Metagenome	183	Y
F037480	Metagenome	168	Y
F054844	Metagenome	139	Y
F057352	Metagenome	136	Y
F074757	Metagenome	119	Y
F079212	Metagenome	116	Y
F105146	Metagenome	100	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25128J35275_100033612	F004771	N/A	MKSRVKIGDLVTMYTHDTGLIGVVLDREPKAISTTPAQICIKWFNTGGSVEWEPEGWLEVVSEAV*
JGI25128J35275_100033614	F019158	AGGA	MKMTLVVDSSDREGLADALKMVRIMHQKYSGNHTAHKESFGKIEFIKLLRKFMRESIAHMENGEDGQVKDVKDLANLRNAKRFADRIFTGER*
JGI25128J35275_100033618	F074757	GGA	MKVGDLVTLSSYCLQSAPMWSWRQKIWFEKKPLVGLVVRVEDNPWKASKKFVSANEKVFYYIKWVQEGPGSRYGRTFHQTDGYFLRNDLKFVKKGDFKE*
JGI25128J35275_10003362	F054844	GGAGG	VLKAGTLVGWRGSIGFVMGACKKRWAKPADVWVMWTDESKPRIECGLRLEVLNASR*
JGI25128J35275_100033621	F057352	GAGG	MKLWVLHGTYESELFTSIHLTEKGCALAAIADVMDFLSVSDEESALQVMNECYAYRDTDGEQTEAFEWDHDKMKEMSSKDLWKIFGDWTELCWERMSDRSYYIDATPQMVQA*
JGI25128J35275_100033629	F079212	AGGAGG	VSDYEKNLIDRCIESHYNMIRMHRRAIIELSRKTIKERELCEECFDFDIINARTGSRTGGSK*
JGI25128J35275_10003363	F105146	GGA	MIEVGSIVRSKKAMFEHRARIGIVRQLRDGAFENQPLAQVYWPHSRTLDWVEAKDMEVVSA*
JGI25128J35275_100033630	F018286	GGAG	MIETVLTTFILLGMVDSHDEHFATVELNTNPASNGGPATAVMPVNAFPCEIYEGKVFYIVKLHDNEDAVIICQEDAKSE*
JGI25128J35275_10003364	F037480	N/A	MQVGDLVTFPNSVAAPQTGIVLQTKPDGINRGTRHIRVKVYWIEDAESSWEPVKWLEVISRS*
JGI25128J35275_10003368	F106118	N/A	MKVGDLVRCMTVDGKPVGLVVEEFRFAMKPTNETEIFYVLIPGYEDPFPIRTSQMELVNASR*
JGI25128J35275_10003369	F031249	AGGAG	MAKVGDLVRVRTKQYGEKLGVVIEVGKDGIRIKPQGHPRDILAAESDVKVLVSV*