Scaffold JGI25132J35274_1008736

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1008736
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2517
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F030886	Metagenome	184	Y
F041168	Metagenome	160	Y
F052942	Metagenome	142	Y
F053549	Metagenome	141	Y
F059942	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10087361	F041168	N/A	RETLMKQAKVRRHTVGFFRNDAEVPFINLEMFETVTAATSIPHYWRDSEGKVSQFWHSGVIPKGTGVVCTHRXRGMKHTFWTVTDPESELIGKVFIVGHTFKDRKEYEFEKFEYSNISPTLKYSILSEKPLTK*
JGI25132J35274_100873610	F053549	GGA	MKVGDLVKWENVLNDSMDHYRVDYGVIIKMSKTGHSTHSAQVLFNDGELAWFDTQQLIVVSAH*
JGI25132J35274_100873612	F052942	AGG	MKVWVMQGCYEGEVFSSIHFTQKGCALACIADVLEFLGVDDNETALSVMNDVYSYTETDGEQTE
JGI25132J35274_10087364	F030886	AGGA	MSYHDGIPPQYNTTGIGVVNPLRQIERKLKKIQDVLDNISDSSVLTANDLKAKLLKVIDDG*
JGI25132J35274_10087366	F018286	GGAG	MNMLTTFVLMGVIDSHDGVFATVELNTNPASNGGPATAVMPVTAFPCEISXGKVFFVVKMHEDQDAEIICQEEEKNENQPDPPDTCMH*
JGI25132J35274_10087369	F059942	GGAGG	VKVGDLISFKPINFGLEDWSNPSIVMHEYESPNEGLWTIWCDGVFCVIDDENYEIVYLTSS*