Scaffold JGI25132J35274_1006745

Overview

Basic Information

• Taxon OID: 3300002483
• Scaffold ID: JGI25132J35274_1006745
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2874
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F041168	Metagenome	160	Y
F053549	Metagenome	141	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10067451	F041168	N/A	KQAKVRRHTVGFFRNDAEVPFINLEMFETITAATSIPHYWRDRDGKVSQFWHSGVIPKGTGVVCTHRERGMKHTFWTVTDPESELIGKMFIVGHTFKDRKEHEFEKFEYSNVSPTLKYSILAEKPLTK*
JGI25132J35274_100674510	F053549	N/A	MKIGDLVKWESVLNDSMDYHTVEYGIVTKMSRTGHTTFSAEVLFNDGETAWFDTQTLEIVSEGR*
JGI25132J35274_10067458	F018286	GAGG	MNMLTTFILVGMVDSHDRYFATVELNTTPASNGGPATAVMPVTAFPCEIYEGKVFYVVKLHEDEDAVIVCQRDVKDGPETKEND*
JGI25132J35274_10067459	F079212	GAGG	MDQKQKKMIDECIESHYNMIKYHRRAIIELSRQTLKEPDICMECFDLEIKNENR*