NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI25132J35274_1006745

Scaffold JGI25132J35274_1006745


Overview

Basic Information
Taxon OID3300002483 Open in IMG/M
Scaffold IDJGI25132J35274_1006745 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2874
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018286Metagenome236Y
F041168Metagenome160Y
F053549Metagenome141Y
F079212Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
JGI25132J35274_10067451F041168N/AKQAKVRRHTVGFFRNDAEVPFINLEMFETITAATSIPHYWRDRDGKVSQFWHSGVIPKGTGVVCTHRERGMKHTFWTVTDPESELIGKMFIVGHTFKDRKEHEFEKFEYSNVSPTLKYSILAEKPLTK*
JGI25132J35274_100674510F053549N/AMKIGDLVKWESVLNDSMDYHTVEYGIVTKMSRTGHTTFSAEVLFNDGETAWFDTQTLEIVSEGR*
JGI25132J35274_10067458F018286GAGGMNMLTTFILVGMVDSHDRYFATVELNTTPASNGGPATAVMPVTAFPCEIYEGKVFYVVKLHEDEDAVIVCQRDVKDGPETKEND*
JGI25132J35274_10067459F079212GAGGMDQKQKKMIDECIESHYNMIKYHRRAIIELSRQTLKEPDICMECFDLEIKNENR*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.