Scaffold B570J29032_109938656

Overview

Basic Information

• Taxon OID: 3300002408
• Scaffold ID: B570J29032_109938656
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3535
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006885	Metagenome / Metatranscriptome	362	Y
F028423	Metagenome / Metatranscriptome	191	Y
F045545	Metagenome / Metatranscriptome	152	Y
F070870	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29032_1099386561	F070870	GGAG	MKKKTKVIVLIVLSFLTALSLWAAANFKKMSDLNIFDIEED*
B570J29032_1099386562	F045545	GAGG	MLNFFICKIKSHNLVDAGSCPFTGKSYLACLRCGATITK*
B570J29032_1099386568	F006885	N/A	MEYLLVIGLTLFLCWSIIKVSDKKRISFLKKIKYRQSDVHEMIKSVIPKQRFEKPKFITQSQRHIQKNMLRVVIEKDKAYWILDNVFYTANAINGRVDENTAKPLDIENMSTKELDKMLSILDDLKQGVGPDDSGSAGNKRV*
B570J29032_1099386569	F028423	AGTAGG	MDNLEKNELIQLISFYKQKLSDIELESLKLQLEVNKLNSMILSLSKESVKKTK*