Scaffold B570J29591_1000375

Overview

Basic Information

• Taxon OID: 3300002404
• Scaffold ID: B570J29591_1000375
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5086
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066566	Metagenome / Metatranscriptome	126	N
F068461	Metagenome	124	Y
F100700	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29591_100037511	F066566	N/A	MKISNNNKRLIKLGAVLLSIILALYIFNLQKYKTNCKSLENIDKIELETRLRELSDKNEQLARQIDYDAVAIQHAQNQINEFRVKCKNCTYHLSTNWEN*
B570J29591_10003755	F068461	GAGG	MYKIFLTIALIAIFLFKQSLNTKQYKVEFENKLEFNAKELHAVIAEVWNINN*
B570J29591_10003757	F100700	N/A	MIIKLKQKSTLQITVETQVKEALALRKGSIGGTKSLIDESNNYHFTITKREIKKIADANGIATVKRGKNV*