Scaffold B570J29604_1000028

Overview

Basic Information

• Taxon OID: 3300002383
• Scaffold ID: B570J29604_1000028
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 15JUN2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11044
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (53.85%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024789	Metagenome / Metatranscriptome	204	Y
F042331	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29604_100002820	F024789	N/A	MERFGVSMPKDPKIMTMDWRSLGYWPVWKDGKKVWVPKDDKSFNEDTKN*
B570J29604_10000287	F042331	AGGAGG	MNEQIKRALASYGRSVLGAATAMYASGVTDPQTLAYSLLGALVPVVLRAANPNDLAFGKMPDVKEVEVALKTAKVVKKAPAKKTAVKKK*