Scaffold JGI24502J29692_10065362

Overview

Basic Information

• Taxon OID: 3300002378
• Scaffold ID: JGI24502J29692_10065362
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 3 RNA1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1431
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065813	Metagenome / Metatranscriptome	127	N
F073596	Metagenome / Metatranscriptome	120	N
F095525	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24502J29692_100653622	F095525	AGG	MKELTDIALVALGLVVGVVVGQLLQYNKKRIENFINKLKKK*
JGI24502J29692_100653623	F073596	N/A	MNVFEKIKLWFTSVSKIVKFLTDTFGEAKILKDKQANFKDWVEFIIAFIKDALQYADEIAALAQSQPVQTKGQVIKAVKENKSLSANFQTAYFKEKAKNFNK*
JGI24502J29692_100653624	F065813	N/A	MIPLMKFFGWFDIIVVTPFVLYFGYKIIKWIIGKLKKQPQEGEIETPDVES*