Scaffold B570J29587_1001141

Overview

Basic Information

• Taxon OID: 3300002296
• Scaffold ID: B570J29587_1001141
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2577
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022399	Metagenome	214	Y
F031460	Metagenome / Metatranscriptome	182	Y
F053253	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29587_10011412	F022399	AGGTGG	MGIKYQSIYSKNGLEVFVNPEDYWADYKVSLNGHHAKKFYGETAWMDVTRFVHDQAVEFWDFNTDGIHRQWQQDIMAELESRFANE*
B570J29587_10011414	F053253	GAGG	MDFDLDTPISKNLTDMLDKVEGHVGDCDCVNCNSLEVLAYMIKVEE*
B570J29587_10011417	F031460	AGAAG	MAKVINEVELHLQMWSTVTLSAEEIQDIYPEFADMVDFDDTDELEQAIXDHMDMNYLDHIQYADGAXDECRIDXXYEDDGSE*