Scaffold B570J29584_1000401

Overview

Basic Information

• Taxon OID: 3300002294
• Scaffold ID: B570J29584_1000401
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4892
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F027782	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29584_10004011	F027782	AGCAG	MKSLTMTKTEQLLDEVITTIQQRGSVYGHPYYNHKRIAGLWSAYLDFPITP
B570J29584_100040111	F000468	N/A	VSLFGGNITDVTVEVRNTGSVSNVISYTLLAMGSLVKLAKEIYTDNLSQDIDGDQIYTLLSSSLLNTWNEVPAAETWSGYSPTETWANAQNIGLGEIDAGLYTMSSRSANPDTIYNIASQIADSALGYMYEDNQGNIGYADADHRQTYLLANGYTELSANTALGSGLRTLTKSADIRNDIYINYGNNFNNEATATDTASIALYGYKGETINSAIHDGTDAQEIADRYISLRAYPYATFDSITFPITNSEIDNADRDALLGVFMGQPIHVTDLPFQINNGAFEGYVEGWRWSTRFNELFLTINLSPINFSQVAMRWNTVPVTEAWNTIGNTLTWEYATIVA*