Scaffold KVRMV2

Basic Information
Taxon OID	3300002231 Open in IMG/M
Scaffold ID	KVRMV2_100026318 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from Santorini caldera mats, Greece - red mat
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002231 Open in IMG/M

Scaffold ID

KVRMV2_100026318 Open in IMG/M

Source Dataset Name

Marine sediment microbial communities from Santorini caldera mats, Greece - red mat

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10069
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (83.87%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10069

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (83.87%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location
Location Name	Santorini caldera, Greece
Coordinates	Lat. (^o)	36.5	Long. (^o)	25.45	Alt. (m)	Depth (m)	336
Location on Map

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Source Dataset Sampling Location

Location Name

Santorini caldera, Greece

Coordinates

Lat. (^o)

36.5

Long. (^o)

25.45

Alt. (m)

Depth (m)

336

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F003834	Metagenome / Metatranscriptome	466	N
F014069	Metagenome / Metatranscriptome	266	N
F018266	Metagenome / Metatranscriptome	236	N
F069444	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
KVRMV2_10002631813	F069444	AGGAG	VKRNLIVYKVDYVNTKEDYSISTGKFVRTKRIVMTPDEVDTNR*
KVRMV2_10002631815	F018266	AGGAGG	VFRVIIENKFRENPINLSRAVKLLYNQDFTGSIRKENLLWWKKYFLKVIHLPILYPKRGYIQIVKIYRDKKPSIRVVTIPSGSDKRELLVLNKIYGGNNG*
KVRMV2_10002631819	F014069	AGGAGG	METVKAPINERVATKVMPLTKWFVEQYFQTYELMSSDPRFKALPPYNQTSCIATVIIATNNALDKSREARKSAETLQDISKATEERKAVNE*
KVRMV2_10002631820	F003834	AGGA	MSSSKTPIRQDEKDYLDHFIETKYDDRKNILKTEMQDTIDKEAEDNFEAFKDKLKITKMHDEVRTLYEDHKKFANEMDSILLEKKAKLDNAINTLEDKLDQWKKIRKWKNDIERSLIKEPDELDRLLKKLCHEETERDYYGGPRGKALQMLDMSKEYCKNLLNAGQSLTTVWGVLNTEMSKEKINTNTIPKPEFLAITK*
KVRMV2_10002631822	F003677	N/A	MVDKNLYYFEADVGKKVYEIEHETTYVTKWQVVAEDRDQAFDIWLENSKEDFNTENSASNNCVCSYVKDYGQMGDTKEIAKIKYDKEMDEVYAE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold KVRMV2_100026318

Overview

Ecosystem & Geography

Associated Families

Sequences