Scaffold S2T7FKBa104N_1680024

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold S2T7FKBa104N_1680024

Scaffold S2T7FKBa104N_1680024

Overview

Basic Information
Taxon OID	3300002228 Open in IMG/M
Scaffold ID	S2T7FKBa104N_1680024 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Baltic Sea - S2t7 FKBa (104N)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Karolinska Institutet
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1073
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	57.305	Long. (^o)	20.0745	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F088307	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
S2T7FKBa104N_16800244	F088307	GGAG	MTDAPWLDCMDGFKYSQEDDAAILDKAALKASQILRISVGEIDKTKLVYLYTLLYNMMGQGVDGKPCEDGDENMRHWLNTHNTHLGFCPAAGLVNRMPEIIGYLESFL*

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