3300002228: Marine microbial communities from the Baltic Sea - S2t7 FKBa (104N)

Overview

Basic Information

• IMG/M Taxon OID: 3300002228
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110183 | Gp0084984 | Ga0022168
• Sample Name: Marine microbial communities from the Baltic Sea - S2t7 FKBa (104N)
• Sequencing Status: Permanent Draft
• Sequencing Center: Karolinska Institutet
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 197840920
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → Viruses	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium loti	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 57.305
  • Long. (^o): 20.0745
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F015595	Metagenome / Metatranscriptome	253	Y
F017641	Metagenome / Metatranscriptome	239	Y
F022590	Metagenome / Metatranscriptome	213	N
F023835	Metagenome / Metatranscriptome	208	N
F032200	Metagenome / Metatranscriptome	180	N
F038671	Metagenome / Metatranscriptome	165	Y
F042351	Metagenome / Metatranscriptome	158	N
F043901	Metagenome / Metatranscriptome	155	Y
F045109	Metagenome / Metatranscriptome	153	N
F046329	Metagenome / Metatranscriptome	151	Y
F088307	Metagenome / Metatranscriptome	109	N
F104759	Metagenome	100	Y
F105077	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
S2T7FKBa104N_1034294	Not Available	707
S2T7FKBa104N_1071830	All Organisms → Viruses	668
S2T7FKBa104N_1094609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4776
S2T7FKBa104N_1221438	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2567
S2T7FKBa104N_1288969	Not Available	1190
S2T7FKBa104N_1293761	All Organisms → Viruses	637
S2T7FKBa104N_1539802	All Organisms → cellular organisms → Bacteria → Proteobacteria	15274
S2T7FKBa104N_1549870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium loti	551
S2T7FKBa104N_1614086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1030
S2T7FKBa104N_1680024	All Organisms → Viruses → Predicted Viral	1073
S2T7FKBa104N_1693561	All Organisms → Viruses → Predicted Viral	1065
S2T7FKBa104N_1746861	Not Available	669
S2T7FKBa104N_1876753	Not Available	753
S2T7FKBa104N_1900367	Not Available	575
S2T7FKBa104N_1928051	Not Available	3535

Sequences

Scaffold ID	Protein ID	Family	Sequence
S2T7FKBa104N_1034294	S2T7FKBa104N_10342942	F038671	MNTNQTTEMQEFFTETEWDMIYNFIGNALDNDDYDKEDVYSIRAKIHNLFYTN
S2T7FKBa104N_1071830	S2T7FKBa104N_10718301	F017641	MNQVFYYSTNWKEGKVNQMWIQQITPEYQECDHKYVAIAYNPEKNVSMVMSNPRNHYDTLNWVRNFCGSFSILN*
S2T7FKBa104N_1094609	S2T7FKBa104N_10946093	F105077	MTKQKSKKQLTDTEYLEIFENFDPAKWRELTPEELAEHRERAKDAVIVEIEEIDPAK*
S2T7FKBa104N_1221438	S2T7FKBa104N_12214381	F046329	FFLLGGPTLRHDAMNRRSACICFLAFLKISLVSSVTQAARTVSRIAGPRWNVNGDWTPSLEEIQGHLRAVHRIDPGPLGIEDLLTLHDNDHNRRGYQAGHGHKKAAKGSAKGYAKF*
S2T7FKBa104N_1288969	S2T7FKBa104N_12889694	F104759	MACKFLEDSKGNKSSKRLWGSILLTIGIVFSSILFFYSLKAGAKDAATALGIINMFLISGGGLLGIGVFEKVIKK*
S2T7FKBa104N_1293761	S2T7FKBa104N_12937612	F043901	MDGAESSIEIKRKAIEEVKRLTNHGKHMEASKLFNTHFPNFGGPHGKS*
S2T7FKBa104N_1539802	S2T7FKBa104N_153980211	F104759	MACKFLEDSKGNKSSKRLWGSILLSIGIAFSSILFFYSLKAGAKDAATALGIINMFLISGGGLLGIGVFEKAINKIDEDK*
S2T7FKBa104N_1549870	S2T7FKBa104N_15498701	F022590	LSSVDISGSEMHATMGETGTPGTPSTAQIHLSTLNVHEAPEVGESHTLTIDGVSFTYNVAEGDTAEVVANALLSQINASFADSEISAELIMREEERWDPDTETSMFMTVVDRIEISGPADVLTPEVMSGITLSSVDISGSEMHATMGETGTPGTPSTAQIHLSTLNVHEAPEVGESHTLTIDG
S2T7FKBa104N_1614086	S2T7FKBa104N_16140861	F045109	KFLLIILLISLSSFSFADEDVDDFKFLRCVEASNGNSQNTKYFEVSVSKQIMIERNGYSFTYTRITPFLIQAELQGLAKLSLHRHLGTLAYSNLNVDGTVKDNQVYQCDSVPRLI*
S2T7FKBa104N_1680024	S2T7FKBa104N_16800244	F088307	MTDAPWLDCMDGFKYSQEDDAAILDKAALKASQILRISVGEIDKTKLVYLYTLLYNMMGQGVDGKPCEDGDENMRHWLNTHNTHLGFCPAAGLVNRMPEIIGYLESFL*
S2T7FKBa104N_1693561	S2T7FKBa104N_16935613	F001968	MEDDLFSEIQDSPGEIFDIPELRDLDDEKFDVNEYLNSNYDY*
S2T7FKBa104N_1746861	S2T7FKBa104N_17468611	F015595	AYTQALHDLNLPEEDVKLLNKIIPDLSHDMRAAGEAFEGVNRMGLGGQEQLGEVKTKAPNADYHKNESPVAARQAEVARDYLKRAARIDELNGHPPGSDGPMLTALKKHNGGRVLVFVMGAFAEMSEDVSRICDIIAHELARIHVSYYNDGAKRTKGMYRQRIQKAWGHAAHRGWARLLLDRTRDLIIHGTAHRGANGAAMPTDEDDHDGNFLFNHPERGGT
S2T7FKBa104N_1876753	S2T7FKBa104N_18767531	F042351	GVDYTHEVVEGDTAEDITSGLLSQLNTGLAGTEISASFVTNEYGMPSIVISGPTDALTSEIASGIKLSSRELSDSVMPAMMEDPGMVGLPATADISLGMLHAGDIDVGESHTITIDGVDYTHEVVEGDTAESIANGLLGHVTAALAGTSISASLKTSEYFDYSSGDEVLVTNIDAIEISGPPEDLSPMIAGISLSSVNIHGADMYASQMMGIPGEPTTAQVNFGNLDDNVFGESHTITIDGVDYTHEVVE
S2T7FKBa104N_1900367	S2T7FKBa104N_19003672	F032200	MSGKKKFKSGKLNAVTEGILIDALKLWQQEFIGEIRKMEADGKRVMFHPNWTAVMLYEFGLEFGVDELAKYEPIEK*
S2T7FKBa104N_1928051	S2T7FKBa104N_19280511	F023835	LPWLICASPHNYSRVMAFNKPRTLQGEIAALEREVDQHRRDMAEIEGNDGVTHGNVSDWLITSGRTLIDKGDELLSLLTLDPDFGKHRDAFM