NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold S2T7FKBa104N_1288969

Scaffold S2T7FKBa104N_1288969


Overview

Basic Information
Taxon OID3300002228 Open in IMG/M
Scaffold IDS2T7FKBa104N_1288969 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea - S2t7 FKBa (104N)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterKarolinska Institutet
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1190
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)57.305Long. (o)20.0745Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104759Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
S2T7FKBa104N_12889694F104759N/AMACKFLEDSKGNKSSKRLWGSILLTIGIVFSSILFFYSLKAGAKDAATALGIINMFLISGGGLLGIGVFEKVIKK*

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