Scaffold MLSBCLC_10142168

Overview

Basic Information

• Taxon OID: 3300002220
• Scaffold ID: MLSBCLC_10142168
• Source Dataset Name: Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3775
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Syncrude, Ft. McMurray, Alberta
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F018135	Metagenome	236	Y
F086805	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
MLSBCLC_1014216814	F001477	AGGAGG	MSNIYTIHPRKSELILLYEVVDDSGRAEWGGASAEQAMQWLTLAPDNARLLVSAWDSDEEDAHLVGQSIDITEIIQQARKVGR*
MLSBCLC_101421685	F086805	GAG	MRELSKRGNLVAGIAIGLLIAGLVWVSGNVWITEEGRICLGSMLKCM*
MLSBCLC_101421686	F018135	AGG	MTIEKVRHSGAYVLSQFVGEGAGEYLFTRTYYFCTLKEAKAQFKIALMEAK*