Scaffold JGI20163J26743_11051038

Overview

Basic Information

• Taxon OID: 3300002185
• Scaffold ID: JGI20163J26743_11051038
• Source Dataset Name: Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 870
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Kakamega Forest, Kenya
• Coordinates
  • Lat. (^o): 0.2917
  • Long. (^o): 34.856

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027226	Metagenome	195	Y
F106067	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20163J26743_110510382	F027226	GGA	MCDSKQKSSYEHASDFEWLWSYDHLKLRIEGNDY*
JGI20163J26743_110510383	F106067	N/A	DSKQKSSYKHVSDFRRLRIYGHFLIPVHALM*TAFMEPAGGIMNSASLVASTRYLDCGEGGVS*