NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F106067

Metagenome Family F106067

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F106067
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 55 residues
Representative Sequence VSDFGRLRSYDRFLIPVHALVXTAFTEPAGGIMNSASLVASSRYLDTWEECREG
Number of Associated Samples 11
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 3.00 %
% of genes from short scaffolds (< 2000 bps) 2.00 %
Associated GOLD sequencing projects 6
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (98.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut
(100.000 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal proximal gut
(100.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 51.85%    β-sheet: 0.00%    Coil/Unstructured: 48.15%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF01359Transposase_1 2.00



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A98.00 %
All OrganismsrootAll Organisms2.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002185|JGI20163J26743_10419599Not Available528Open in IMG/M
3300002185|JGI20163J26743_11051038Not Available870Open in IMG/M
3300027904|Ga0209737_10137578All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera2435Open in IMG/M
3300027984|Ga0209629_10085816All Organisms → cellular organisms → Eukaryota → Opisthokonta3148Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut100.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001474Cubitermes ugandensis crop segment gut microbial communities from Kakamega Forest, Kenya - Cu122CHost-AssociatedOpen in IMG/M
3300001544Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1Host-AssociatedOpen in IMG/M
3300002125Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4Host-AssociatedOpen in IMG/M
3300002127Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3Host-AssociatedOpen in IMG/M
3300002175Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5Host-AssociatedOpen in IMG/M
3300002185Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1Host-AssociatedOpen in IMG/M
3300027558Cubitermes ugandensis crop segment gut microbial communities from Kakamega Forest, Kenya - Cu122C (SPAdes)Host-AssociatedOpen in IMG/M
3300027891Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)Host-AssociatedOpen in IMG/M
3300027904Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027960Cubitermes ugandensis midgut segment microbial communities from Kakamega Forest, Kenya - Cu122M (SPAdes)Host-AssociatedOpen in IMG/M
3300027984Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 (SPAdes)Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20161J15289_100674613300001474Termite GutMCDSKQKSSYKHVSDFRRLRIYGHFLIPVHALM*TAFTEPAGGIMNSASLVASTRYLDCGEGGVS*
JGI20163J15578_1005440313300001544Termite GutMCDSKQKISYKYVSDFRRLRSYGRFLIPVHALM*TAFTEPAGGIMNSVNLLSSTRYLDTWEE
JGI20163J15578_1018706813300001544Termite GutMKKSSYKHVSDFGRLRSYDRFLIPVHALV*TAFTEPAGGIMNSASLVASSRYLDTWEECREGGVS*
JGI20163J15578_1040740813300001544Termite GutVSDFGRLRSYNRFLIPAHALV*TAFTEPAGGIMDSASLVVSSRYLDTWEECREG
JGI20163J15578_1043301313300001544Termite GutMCDSKQKSSYKHVSDFRRLRIYGHFLIPLHALM*TAFTEPAGGIMNSASLVASTRYLDCGEG
JGI20163J15578_1046504913300001544Termite GutVSDFRRLRIYGHFLIPVHALM*TAFKVPAGGIMNSASLVASTRYLD
JGI20163J15578_1053897713300001544Termite GutVSDFGRLPSYDRFLIPVHALV*TAFTEPAGGIMNSASLVASSRYLDTWEECREGGVSWCAVLDAQFT
JGI20163J15578_1056205313300001544Termite GutVSDFGRLRSYDCFLIPVHALV*TAFTEPAGGIMNSASLVASSRYL
JGI20163J15578_1058560213300001544Termite GutMCPILDGSYDRFLIPVHALV*TAFTEPAGGVMNSVSLVASSRYLDTWEEFREGGVS
JGI20163J15578_1068801613300001544Termite GutVSDFGRLXSYDXFLIPVHALV*TAFTEPAGGIMKSASLVASSRYLDTW
JGI20163J15578_1076687623300001544Termite GutMIVCVIHALM*TAFTEPAGEIMNSASLVANTRYLDCGEGGVS*
JGI20163J15578_1086835613300001544Termite GutVCDFGQLQSYDRFLIPVHALV*TAFTEPAGGIMNSASLVASSRYLNTWEEYREGGVS*
JGI20165J26630_1012799523300002125Termite GutMCDSKQKISYKYVSDFRRLRSYGRFLIPVHALM*TAFTEPAGGIMNSVNLLSSTRYLDTWEECGEGGVS*
JGI20165J26630_1019809613300002125Termite GutVSDFGRLRSYDRFLIPVHALV*TAFKGPAGGIINSASLVASSRY
JGI20165J26630_1044045613300002125Termite GutVSDFRRLRIYGHFLIPVHAVM*TAFTEAAGGIMNSASLVASTHNLDYGEGGVS*
JGI20164J26629_1022337423300002127Termite GutVSDFGRLRXYXHFLIPVHALVLTAFTEPAGGIMNSASLVASSRYLDTWEEFGERWGELVCSSG
JGI20166J26741_1000607113300002175Termite GutVSDFRRLRSYDRSLIPVHALV*TAFTEPAGGIMNSASLVASSRYLDTWEECREGGVS
JGI20166J26741_1007399223300002175Termite GutMKKSSYKYVSDFGRLRSYDRFLIPAHALV*TVFTEPAGGIMNSASLVASSRYLDTWEEFREGGLS
JGI20166J26741_1013808523300002175Termite GutVSDFGRLRSYDRFLIPVHALV*TAFTEPAGGIINSASLVASSRYLDTWEECREGGVS*
JGI20166J26741_1153664313300002175Termite GutVSDSGRLRSYDRFLIPVHALV*TAFTEPAGGIMNSASLVASSRYLDTWEECREGGVS*
JGI20166J26741_1159122613300002175Termite GutVSDFGRLWSYDRFLIPVHDLV*TAYTKPAGGIMNSASLVASSRYLDTWEECREGGVS*
JGI20166J26741_1159818613300002175Termite GutVSDFGLLRSYDRFLIPVHALV*TAFTEPAGGIMNSASLVASLRYLD
JGI20166J26741_1173560033300002175Termite GutVSDFGRLRIYDGFLIPVHALV*TAFTEPAGGILNSASLVASSRYLDTWEECREGGLS*
JGI20166J26741_1174854513300002175Termite GutVSDFGRLRSYDRFLIPVHAVV*TAFTEPAGVIMNSASLVASSRYLDTWEEFREGGMS*
JGI20166J26741_1181296913300002175Termite GutVSDFRRLRIYGHFLIPVHALM*TAFKVPAGGIMNSASLVASTRYLDCGEGGVS*
JGI20166J26741_1188557713300002175Termite GutSKQKSSYKHVSDFRRLRIYGHFLIPVHALM*TAFMEPAGGIMNSASLVASTRYLDCGEGGVS*
JGI20166J26741_1189622313300002175Termite GutMKHVSDFGRLRSYDRFLIPVHAVV*TAFTEPAGRIMNSASFVASSRYLDTWEECREGGVS
JGI20166J26741_1193695813300002175Termite GutVSYFRRLRIYEHFLISIHTLM*TAFTEPAGGIMNSASLVASTRYLDCGEGG
JGI20166J26741_1197789813300002175Termite GutVSDFGRLQSYNRFLIPVHALV*TAFTQPAGGIMNSASLVASSRYLDTREECREGGVS*
JGI20166J26741_1203586513300002175Termite GutVSDFGRLRSYDRFLILVHALV*TAFTERAGGIMKSASLVASSRYLDAWEECREGGVS*
JGI20163J26743_1041959913300002185Termite GutTAGGDFLGLCDEKSSYKHVSDFGRLRSYDRFLIPVHALV*TAFTEPAGGIMNSASLVASSLYLDTWEECREGGVS*
JGI20163J26743_1043184313300002185Termite GutMKKSSYKYVSDFGRLRSYDRFLIPAHALV*TVFTEPAGGIMNSASLVASSRYLDTWEEFREGGLSWCAVL
JGI20163J26743_1046342613300002185Termite GutVSDFRRLRIYGNFLIPVHAFM*TAFTEPAGGIMNSSSLVASTRYLDCGEGG
JGI20163J26743_1083607323300002185Termite GutVSDFGRLRSYDRFLNPVHALV*TAFTVPAGGIMNSASLVASSRYLDTW
JGI20163J26743_1088358313300002185Termite GutVSDFGRLGSYDRFLIPVHALE*TAFTEPAGGIMNSASLVASSRYLDTWEECREGGVS*
JGI20163J26743_1093693713300002185Termite GutVSDFGRLLIYDRFLIPVHGLV*TAFMEPAGGIMNSASLVASSRYLDTWEECR
JGI20163J26743_1100229713300002185Termite GutVSDFRRLRIYGHFLIPVHALM*TAFKVPAGGIMNSASLVASTRYLDCGEGGV
JGI20163J26743_1102677413300002185Termite GutVSDFGRLRSYDRLLIPVHALV*TAFTEPAGGIMNSASLVASSRYLD
JGI20163J26743_1105103833300002185Termite GutDSKQKSSYKHVSDFRRLRIYGHFLIPVHALM*TAFMEPAGGIMNSASLVASTRYLDCGEGGVS*
JGI20163J26743_1105465223300002185Termite GutVSDFGQLRSYDRSLIPVHALV*TAFAGGIMNSASLVASSRYLNTWEEFRE
Ga0209531_1007113613300027558Termite GutVSDFGRLRIYGHFLIPVHALMXTTFTEPAGGIMNSASLVASTRYLDCGEGEVS
Ga0209531_1014498713300027558Termite GutVSDFGRLRSYDRFLIPVQALVXTAFTEPAGGIMNSASLVASSRYLDTWEE
Ga0209531_1015325513300027558Termite GutVSDFGRLRSYDRLLIPVHALVXTVFTEPAGGIMNSASLVASSRYLDSW
Ga0209628_1002798613300027891Termite GutVSDFGRLRRYDRFLIPVDALVXTAFTEPAGGIMNSASLVASLCYLDTWEECREGGVS
Ga0209628_1011022913300027891Termite GutVSDFGRLRSYDRLLIPVHALVXTAFTEPAGGIMNSASLVASSRYLDTWEECREG
Ga0209628_1011719933300027891Termite GutVSDFGRLWSHDRFLIPVHTLVXTVFTEPAGGIMISASLVASSRYLDTGGMPGR
Ga0209628_1015764313300027891Termite GutMCDSKQKISYKYVSDFRRLRSYGRFLIPVHALMXTAFTEPAGGIMNSVNLLSSTRYLDTWEECGEGGVS
Ga0209628_1025047023300027891Termite GutMKKVHINRSDFGRLRSYDRFLIPVHALVXTAFTEPAGGIMNSASLVASSRYLDTWVECREGGVS
Ga0209628_1042193323300027891Termite GutVSDFRRLRIYGHILIPVHALMXTAFTEPAGGIINSASLVAST
Ga0209628_1042405813300027891Termite GutVSDFGRLRSYDRFLIPVQALVXTAFTEPAGGIMNSASLVASSRYLDTWEECWEGGVS
Ga0209628_1047398213300027891Termite GutMCDSKQKSSYKHVSDFRRLRIYGHFLIPVPALMXTAFTESAGGIMNSASLVASTRYLDCGEGGVS
Ga0209628_1052319443300027891Termite GutVSDFGRLRSYDRFLIPVHALVXTAFTVPAGGIMNSASLVASSRYLDTWEEC
Ga0209628_1061599413300027891Termite GutVSDFGRLRSYNRFLIPAHALVXTAFTEPAGGIMDSASLVVSSRYLDTWEECREGGVS
Ga0209628_1086336413300027891Termite GutVSDFGRLWSYDRFLIPVHDLVXTAYTKPAGGIMNSASLVASSRYLDTWEECREGGVS
Ga0209628_1087639823300027891Termite GutVSDFGRLWSYDRFLIPVHALVXTAFTEPAGGIMNSASLVASSCYLDTWE
Ga0209628_1089580013300027891Termite GutVSDFGQLRSYDHFLIPVHALVXTAFTEPAGGIMNSASLVASSRYLDTREQCREG
Ga0209628_1094448513300027891Termite GutVSDFGRLQSYNRFLIPVHALVXTAFTQPAGGIMNSASLVASSRYLDTREECREGGVS
Ga0209628_1105309913300027891Termite GutVSDFRRLRIYGHFLIPVHALMXTAFTEPAGGIMNSASLVASTRYLDCGEGGVS
Ga0209628_1110155923300027891Termite GutVSDFGRFRSYDRFLIPVHALVXTAFTEPAGRIMNSASLVASSRYLDTWEECREGG
Ga0209628_1117677713300027891Termite GutIYGHFLIPVHALMXTAFMEPAGGIMNSASLVASTRYLDCGEGGVS
Ga0209628_1123014513300027891Termite GutVSDFGRLRSYDRFLIPVHALVXTAFTEPAGGIMNSAILVASSRYLDTWK
Ga0209628_1147862613300027891Termite GutVSDFGRLHSYDRFLIHVHTLVXTAFTEPAGGIMNSASLVTS
Ga0209628_1148190813300027891Termite GutVSDFGRLWSYDRFLIPVHGLVXTAFTEPAGGIMNSASLVASSRYLDTWEEC
Ga0209737_1002411013300027904Termite GutVSDFGQLRSYDRFLIPVHALVXTAFTEPAGGIMNSASLVTSSRYLDTWEECRDGGV
Ga0209737_1012990253300027904Termite GutMCDSKQKSSYKHVSDFRQLRSYGHFLIPVHALMRTAFTEPAGRIMNSASLVASTRYLDTWEECGEGGVS
Ga0209737_1013757843300027904Termite GutVSDFGRLRSYDRFLIPIHALVXTAFMEPAGAIMNSASLVTSSHYLDTRVGCREGGV
Ga0209737_1019187413300027904Termite GutVSDFGRLRSYDRFLIPVHALVXTAFTEPAGGIMNSASLVASSRYLDTWEECREG
Ga0209737_1022666013300027904Termite GutVSDFGRLRSYERFLIPVHALVXTAFTEPAGGIMNSASLVASSRYLDTW
Ga0209737_1027105513300027904Termite GutVSDFGRLRSYDRFLIPVHALEXTAFTEPAGGIMNSASLVASSRYLDTWEEFREGG
Ga0209737_1028557333300027904Termite GutVSDFGRLRSYDRSLIPVHALVXTAFTEPAGGIMNSASLVASLRYL
Ga0209737_1038237113300027904Termite GutVSDFGRLRSYYRFLIPVHALVXTACTEPAGGIMNSASLVASSRYLGTW
Ga0209737_1047013623300027904Termite GutVSDFXRLRSYNRFLIPVHAVVXTAFTEPAGGIMNSASLVASSRYLDT
Ga0209737_1056019423300027904Termite GutVSDFGRLRSYNRFLIPVHAVXTVFTEPAGGIMNSASLVASSRYLDT
Ga0209737_1059276213300027904Termite GutMTNKVGIQSVSPLQGITARGDFLGLCDEKSSHKYVSDFGRLRSYDRFLIPVHALVXTAFTEPAGGIMNSASLVASSRYLDTWVECREGG
Ga0209737_1062718113300027904Termite GutVSDFGRLRSYDRFIIPVHALVXTAFTEPAGGIMNSASLVA
Ga0209737_1074416013300027904Termite GutVSDFRRLRIYGHFLIPVHAVMXTAFTEAAGGIMNSASLVASTHNLD
Ga0209737_1084402013300027904Termite GutVSDLGRLRSYDRFLIHVHALVXTAFTEPAGGIMNSASLVASSRYLDTWEECRE
Ga0209737_1097272513300027904Termite GutVSDFGRLRSYDRFLIPVHAVVXTAFTEPAGVIMNSASLVASSRYLDTWEEFREGGM
Ga0209737_1103861913300027904Termite GutVSDFERLRSYDRFLIPVHALVXTAFMEPAGGIMNSASLVASSRYLDTWEECREGGVS
Ga0209737_1116489023300027904Termite GutVSDFGRLRSYDSFLIPVHALVXTAFKEPAGGIMNSASLVAISRYLDTWD
Ga0209627_108799313300027960Termite GutMSDFGRLRNYDRFLIPIHALVXTAFTEPAGGIMNSASLVASSRYLDTWVECREGG
Ga0209627_115932413300027960Termite GutVSDFERLRSYDRFLIPVHALVXTAFMEPAGGIMNSASLV
Ga0209629_1007879833300027984Termite GutRLRSYDRFLIPVHALVXTAFTEPAGGIMNSASLIASSRYLDTWEECREGGVS
Ga0209629_1008581653300027984Termite GutVSDFGRLWSYDRFLIPVHALVXTTFMEPAGRIMNSASLVASSRYLDTWEECQEGGVS
Ga0209629_1010152613300027984Termite GutVSDFGRLRSYDRFLIPVHALVXTAFTEPAGGIMNSAILVASSRYLDTWEECR
Ga0209629_1015913023300027984Termite GutMCDYKQKSSYKHVSDFRRLRTYGHFLIPVHALMXTAFTEPAGGIMNSASLVASTRYLDCG
Ga0209629_1017984523300027984Termite GutVSDFGRLRSYDRLLIPVHALVXTAFTEPAGGIMNSASLVASSRYLDTWEECLEG
Ga0209629_1018499313300027984Termite GutGDFLGLCDEKSSYKHVSDFGRLRSYDRFLIPIHALVXTAFMEPAGAIMNSASLVTSSHYLDTRVGCREGGVS
Ga0209629_1025155323300027984Termite GutVSDFGRLRSYDRFLIPVHALLXTAFTEPAGGIMNSASLVASSRYLDTWEECREGGV
Ga0209629_1031308613300027984Termite GutVSDFGWLRSHDHFLIPIHALVXTAFTEPAGGIMNSAGLVASSRYLDTCEGCWE
Ga0209629_1034325013300027984Termite GutVSDSGRLRSYDRFLIPVHALVXTAFTEPAGGIMNSASLVASSRYLDTWEECREGGVS
Ga0209629_1036647013300027984Termite GutVSDFGRLRSYDRFLIPAHALVXTAFTEPAGEIMNSASLVASSRYLDTWEE
Ga0209629_1049287533300027984Termite GutMKHVSDFGRLRSYDRFLIPVHAVVXTAFTEPAGGIMNSASLVA
Ga0209629_1060221723300027984Termite GutVSDFGRLRSYGHFLIPVHALMXTAFTEPAGGIMNSASL
Ga0209629_1061113313300027984Termite GutMIVCVILSKKGSFKHVSDFRRLRINGHFLIPVHALMXTAFTEPAGGIMNSASLVASTPYLDCGEGGVS
Ga0209629_1061520513300027984Termite GutVSDFGPLRRYDRFLILVHALVXTAFTVPAGGIMNSASLVTSSRYLDTXDECREG
Ga0209629_1061556413300027984Termite GutTSGNDSMCDSKQKSSYKHVSDFRRLRIYGHFLIPVHALMXTAFMEPAGGIMNSASLVASTRYLDCGEGGVS
Ga0209629_1062204713300027984Termite GutMCPDFGRLRSYDRFLIPVHALVXTAFTEPAGGIMNSASLVASSHYLDTWG
Ga0209629_1096732513300027984Termite GutMKKSSYKYVSDFGRLRSYDRFLIPAHALVXTVFTEPAGGIMNSASLVASSRYLDTWEEFREGGLSW
Ga0209629_1099666413300027984Termite GutMCDSKQKISYKHVSDFRRLRIYGHFLIPVHALMXTAFMEPAGRIMNSASLVASTGYLDCGEG


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.