Basic Information | |
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Taxon OID | 3300002168 Open in IMG/M |
Scaffold ID | JGI24712J26585_10091159 Open in IMG/M |
Source Dataset Name | Biogas fermentation microbial communities from Germany - Plant 3 DNA2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1060 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | Bielefeld, North Rhine-Westphalia, Germany | |||||||
Coordinates | Lat. (o) | 52.0385 | Long. (o) | 8.4956 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003987 | Metagenome / Metatranscriptome | 458 | Y |
F004383 | Metagenome / Metatranscriptome | 440 | Y |
F075034 | Metagenome / Metatranscriptome | 119 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI24712J26585_100911592 | F003987 | GGAGG | MIPALPCGTYADSGVPAGAFYVAAFEDSDQPHHVTECRIETVLRALRALQACGYDDVEIGSIEQGGKQHLLLIGLDGEARFGDRQLGCIAVLPVGVD* |
JGI24712J26585_100911593 | F004383 | GGGGG | MPSNDNLLEHAFMARIRADEYREALAALQQEFDERPDVIEIKRRIERCEEERRQCIAQAQAEGVTKQGSFRLKIRTRKTRTVIPERFFTRFGAETFVRCSTVAIGKAEALLGKAALDDCCEVEVKETGVSVEYVRPEVSE* |
JGI24712J26585_100911594 | F075034 | N/A | RADRMIACRSCGAPTTSSDGICRDCADAMREERAEALGERCRIHRVRYVEDLPVSALEEMQAEWGRC* |
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