Basic Information | |
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Taxon OID | 3300002168 Open in IMG/M |
Scaffold ID | JGI24712J26585_10000027 Open in IMG/M |
Source Dataset Name | Biogas fermentation microbial communities from Germany - Plant 3 DNA2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 108575 |
Total Scaffold Genes | 187 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 148 (79.14%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | Bielefeld, North Rhine-Westphalia, Germany | |||||||
Coordinates | Lat. (o) | 52.0385 | Long. (o) | 8.4956 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F020859 | Metagenome / Metatranscriptome | 221 | Y |
F038199 | Metagenome | 166 | Y |
F087072 | Metagenome / Metatranscriptome | 110 | Y |
F091897 | Metagenome / Metatranscriptome | 107 | Y |
F093744 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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JGI24712J26585_10000027126 | F087072 | GAGG | MKSTVFTKRVFSLELSEEELGVIAGALYCTNSEDIKCFVDKYKYPCTGYSFDEVAELQEKLSEEVNKLIEGEKRNL* |
JGI24712J26585_1000002744 | F020859 | AGGAGG | MSKKIIAREVRPECIDFSYYFDDDGLTNAGGENCAVYIIPGDRRYYDGFNMQEYKEIEEQAKEIISGFEDVLDGYDLTYKQVMEDNGIVYNSRRCHLLKKWVENANIAYIDCIAEFLTIITGEKWNVKAFTGFSQGDYCEVVYCEKHYTEEHIVEIGKFWLGCGTEFCIDGIYGYYVIDNIRWAEDEKLVNYLAECYGCKPENLEVYLYKSEHEDYELLRSV* |
JGI24712J26585_1000002755 | F038199 | GAGG | MEYTQAEFLQLIQQYNSTDRKIIKANLKHIMDIYGIKPADIIALGYSSRNVYAWTNRSTSNIPLFEQALNIAVKFNFSITEFIK* |
JGI24712J26585_1000002761 | F091897 | AGGAGG | MIGSSINSFPNMQYQCCKCGKDLGDKYSRLKGKKQPDVNIINGKQYCNKCADKYWND* |
JGI24712J26585_1000002762 | F093744 | AGGAGG | MGFKIGDRVEVNYPVDDFQGHVGIVKKIITDTELIPGKTVVMCYWAFLDKEIAFYESSLDLI* |
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