Scaffold JGI24766J26685_10012172

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10012172
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2275
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003663	Metagenome / Metatranscriptome	474	Y
F017134	Metagenome / Metatranscriptome	242	Y
F054797	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_100121721	F003663	AGGTGG	MLSTAIEILDVTKDSIFDEDIMALAGELHTRRNELSDEIFAKYLFMYSAALSSKVADGVTKILLTEKEMSDLIATIDEMDNLSENILEENE*
JGI24766J26685_100121725	F017134	GGAG	MENFTVACLNHEICGATETFYSAEEYEIYGDDYMCAECYDSEEMEFYELTGWADSDALASAGFGMDEDY*
JGI24766J26685_100121727	F054797	N/A	HPAVFSKMVVDFAEMFAKDNPRFDANRFYTASNYKIPTFTN*