Scaffold JGI24766J26685_10008374

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10008374
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2827
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F002241	Metagenome / Metatranscriptome	579	Y
F014613	Metagenome / Metatranscriptome	261	Y
F059096	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_100083742	F002241	GGA	MSKPHSIRYIRQLMEWGFDXXXIAKDCGINLESLETRLRRAKERERRNGNQGTESGISGSQPNS*
JGI24766J26685_100083745	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYXIKTHILAESLVANCDVYIIKTELYRTEADLHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKPSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVTAIADQLGAEIIDEIPLCXGGDGPMVLKTGTKEGKEYRGWVCPTPKSGHPAKWMRIGSDGHWVFQK*
JGI24766J26685_100083746	F059096	GGA	MTPAVWKVQSETPLRKAQVRFYCQPCADEVQNWPDGTFYSXKEXLDDAIXXFAGREKLNVELP*
JGI24766J26685_100083748	F014613	N/A	MLPNLSDEAVVGIIIGVPFIGLYIWSLWNSSKAKAFNEGYKRGRSSVRYTEIVK*