NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24766J26685_10002305

Scaffold JGI24766J26685_10002305


Overview

Basic Information
Taxon OID3300002161 Open in IMG/M
Scaffold IDJGI24766J26685_10002305 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5663
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002071Metagenome / Metatranscriptome596Y
F003663Metagenome / Metatranscriptome474Y
F005741Metagenome / Metatranscriptome391Y
F006744Metagenome / Metatranscriptome365Y
F008132Metagenome / Metatranscriptome338Y
F009530Metagenome / Metatranscriptome316Y

Sequences

Protein IDFamilyRBSSequence
JGI24766J26685_1000230512F006744AGGMNLEEFKKHVIAQREASKAEALSVLSATITKTNERENL*
JGI24766J26685_1000230516F008132AGGAGMTKWDTIQADVADAYTHFDEEDAYNQMLDDEEDTFGFIKAINIDHLTDEQLDEVFNMFGDK*
JGI24766J26685_1000230517F009530AGAAGMTITYSIWQGSRLLSIDNVAHDVKAIDHLIQSLNASELGKGTKFTANVMTIKAGE*
JGI24766J26685_100023053F005741AGGAMKNRFRVEIYDANKAHDLTIYSETGVDKEYLTELVISNLRKFQGKVNAYVFDNVKKKKTSALILDEVVVNKLNTPRTLTAIEIGLA*
JGI24766J26685_100023055F002071AGGAMEIGQTYTTTESGITGIIKAVDNHPSGVNRILLDVNGKERWTSAPAN*
JGI24766J26685_100023057F003663AGGTGGMLSTAINLLEATKDSIFDDEIMGLAGELHTRRNELSDEIFAKYLFMYSSAVASKVADSVTRVLLTEAEMSDLCDTISEMDNLTETILEENN*
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