Scaffold JGI24538J26636_10013718

Overview

Basic Information

• Taxon OID: 3300002154
• Scaffold ID: JGI24538J26636_10013718
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the South Atlantic Ocean - 30m ANT-15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2016
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): 78.8697
  • Long. (^o): 8.1122

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038686	Metagenome / Metatranscriptome	165	Y
F056966	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24538J26636_100137181	F056966	AGGA	MPQLTVNEAGNSTFTDSITIKSGDFAAAVIGTKADDATHTIEYNIPQGAVVQKVAYKLNEAFDDSGSGISLTLTVGDDDTAAGYIGASQLHLDGTEVTYAYNDGSYFTAGGDANTVNGKLYTADGKEFKLLFTPGAGGAYSLNELSAGSVTVFFEMARL*
JGI24538J26636_100137185	F038686	N/A	MHISLDSALGRQRRLNSVGESVFQIAPDASAGYSLRSLTGGDPSVVRVRRDSDNGERDF