Scaffold M3t2BS2_1355375

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold M3t2BS2_1355375

Scaffold M3t2BS2_1355375

Overview

Basic Information
Taxon OID	3300002139 Open in IMG/M
Scaffold ID	M3t2BS2_1355375 Open in IMG/M
Source Dataset Name	M3t2BS2 (117f)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18338
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (81.82%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	65.3915	Long. (^o)	23.49916667	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043971	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
M3t2BS2_13553753	F043971	AGCAGG	MSDEEYKEAQKFYKRLRLKGSKYQFKNTLGVRIKCFGVAAPNGHAELHEREIIVGIVEMVGPAPSFEDLVARLGLEAFNKVDVVYGFSESFKDAWNETIGVEPEGSL*

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