Scaffold JGI24218J26658_1000122

Overview

Basic Information

• Taxon OID: 3300002092
• Scaffold ID: JGI24218J26658_1000122
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57546
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (72.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.152741
  • Long. (^o): 13.022518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045505	Metagenome	152	Y
F067354	Metagenome / Metatranscriptome	125	Y
F096502	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24218J26658_100012213	F067354	GGAG	MSTLFNNETPRILPKVSFNKKSFLDIVSPLVKLDIIKEGEGSTCRNAHKLDLTDSIYEKIDAE*
JGI24218J26658_100012218	F096502	N/A	MYPSTGEIMEPRFNIKVADMANPDNNFQDPNEQWIGDFIDIDSNHFEKNMDAYMQQREGLGDQIQRYVDESHMHAQDANPAQDRALMVLEPEVAGTGDLQLAPVKASKLASQVNGFRNAQPRVDFTFGIVAKKDNGTLVNSRVVAETPTTKIAGTVLAVGDAEFAVLWDDKTASVERKADYELVFSN*
JGI24218J26658_100012235	F045505	N/A	MKKKMTIVISYDAMNDMSDELASQEINETIAGLMNSLRTQVNNAQVSVKFQDNKENK*