Scaffold JGI24749J21850_1015108

Overview

Basic Information

• Taxon OID: 3300002076
• Scaffold ID: JGI24749J21850_1015108
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1083
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045248	Metagenome / Metatranscriptome	153	Y
F081796	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24749J21850_10151081	F081796	N/A	WRRAINGFNETPTPTDLESDVLAASAHFEAALTDNPKLVDAQAALAACIGLRMFLHKTVDDEMRAMLERVKALLAEAQALEPENPRLLWVRGPMEWFTPKGSPDDMLDAHQARSIATYQHALQGLPGSLRSGPEPLQPTWGEPELHMSLGWAYAKKRVPDLAQAEVHARKALALVPSWHYVRDILLPQIESARRTAAR*
JGI24749J21850_10151082	F045248	N/A	MELWLTLRFRGSPLGLRDRFPAELAFIARQLRSIDGPEVPPSERISTAHVQATPEQAEGILAWGRMRTVDGRTLLASASFEERWHARELAPGTVVELVRAPAADAPVVLARGRSHLARWACSHCDRLRWEQVGPLELAL