Scaffold SMTZ23_10056932

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SMTZ23_10056932

Scaffold SMTZ23_10056932

Overview

Basic Information
Taxon OID	3300002053 Open in IMG/M
Scaffold ID	SMTZ23_10056932 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_SMTZ
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7268
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.6478111	Long. (^o)	-77.1112083	Alt. (m)		Depth (m)	.24 to .32
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F091054	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
SMTZ23_100569329	F091054	AGGAGG	LRKILGTLGLALLLASLLTVLVTGSLMAAGDNAKADQNHYNYQECPGGEPYGDDIPNLWGEPGPHGQGNAS*

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