Scaffold GOS2245_1021440

Overview

Basic Information

• Taxon OID: 3300001966
• Scaffold ID: GOS2245_1021440
• Source Dataset Name: Marine microbial communities from Roca Redonda, Equador - GS030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 956
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Roca Redonda, Equador
• Coordinates
  • Lat. (^o): 0.27222222
  • Long. (^o): -91.63333
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058430	Metagenome	135	Y
F092221	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2245_10214401	F092221	GGTGG	MSFGFKKFEDKSNFELKNNFKNFENIPKKPSVYPRGSDGYVLESEVKFYNQDSLWTRWRRGYELYTFTQQILGSTAKERDKRGDYRLFFTFQQFPGVFIPARIFTFPSTNQELGEHICGMRDTDGFSFYDFGLPILDVRYLAPQVNATYSQSGTTL
GOS2245_10214402	F058430	N/A	KLFCDFLTYNSGTVPTDDTFEVIDTSNFTPTTFDITIPTIGGGATITGNVALSLPIDFCFYLVSTGTITNINQFFPLFTQSIPQVAENQILSTTLTEKLPLINHPTVQSGALNFAGSNNEIAPKQRGLMLRRGQALYVAASGSTALTNGFYCNVQGGFY*