Scaffold GOS2243_1081312

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2243_1081312

Scaffold GOS2243_1081312

Overview

Basic Information
Taxon OID	3300001965 Open in IMG/M
Scaffold ID	GOS2243_1081312 Open in IMG/M
Source Dataset Name	Marine microbial communities from Coastal Floreana, Equador - GS028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1770
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Coastal Floreana, Equador
Coordinates	Lat. (^o)	-1.2169445	Long. (^o)	-90.319725	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F093842	Metagenome / Metatranscriptome	106	N
F093906	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2243_10813125	F093906	N/A	MMFLNTNGREGTGNFNVDFDFTDKQIELLKQYGNLITAIYYSEKNNKGKLKIQTIEYPEI
GOS2243_10813127	F093842	N/A	MKLTILNFTTGHIHIHNVSSQQEVMNYVDIHSNKTWMLSTNEEFKIINH*

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