Scaffold GOS2232_1007856

Overview

Basic Information

• Taxon OID: 3300001958
• Scaffold ID: GOS2232_1007856
• Source Dataset Name: Marine microbial communities from Gulf of Mexico, USA - GS016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1532
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Gulf of Mexico, USA
• Coordinates
  • Lat. (^o): 24.174723
  • Long. (^o): -84.344444
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033075	Metagenome	178	Y
F078838	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2232_10078563	F078838	GGAGG	MPFDTYIDDRAMIPILLEHDWMIWKDTWTDCSYETYMALKKMMRHNGNAMPMV*
GOS2232_10078564	F033075	GGAG	MTTSTPTNPMQDAYMQILRSYNPLEIKDILLHGASRKATKHKDEDDITTYYANYNEGIHHNLLDAKPQYCKDYLYMQWCYNQTDKTHEDQYYFLRDVVWLYIDSVADELGDEYKLHNKDRQTIEDEVLAIDLEHRKKQLQIIDGGKK*