Scaffold GOS2250_1012815

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2250_1012815

Scaffold GOS2250_1012815

Overview

Basic Information
Taxon OID	3300001957 Open in IMG/M
Scaffold ID	GOS2250_1012815 Open in IMG/M
Source Dataset Name	Marine microbial communities from Wolf Island, Equador - GS035
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1389
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Wolf Island, Equador
Coordinates	Lat. (^o)	1.3891667	Long. (^o)	-91.81695	Alt. (m)		Depth (m)	1.7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040614	Metagenome / Metatranscriptome	161	Y
F081151	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2250_10128152	F040614	AGGAGG	MSKTAYFLLKTSIREDYDIADAARDVEQMAEAVCVDYMWLDEFTSTPYIAY*
GOS2250_10128153	F081151	GAG	MKQYKFTIVVRSPMDVKDMVWAFSHKLKDAFPIVSISFDEVNDDKKDNSDYTNIPERY*

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