Scaffold GOS2235_1005110

Overview

Basic Information

• Taxon OID: 3300001954
• Scaffold ID: GOS2235_1005110
• Source Dataset Name: Marine microbial communities from Colon, Panama - GS019
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1388
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Colon, Panama
• Coordinates
  • Lat. (^o): 10.716389
  • Long. (^o): -80.25445
  • Depth (m): 1.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033075	Metagenome	178	Y
F078838	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2235_10051103	F078838	GGAGG	MFNTYIDDRAMIPVLLDHDWMIWKDTWTDCSYETYMALKKMMRHTGNAIPMV*
GOS2235_10051104	F033075	GGAG	MTNKSPMQLAYESILSSYNPLHIKDILLHGAARKAIHHKSTDDILTYYANHNEGIHHNLLDAKFEYCRSYLLCQAAYNHSEKTDEDQFEFLRDVVWLYIDVVADELGDEYKLHDKPRKEIEDEVLAIDLDIRKQQLQVIDGGKS*