Scaffold GOS2226_1031768

Overview

Basic Information

• Taxon OID: 3300001943
• Scaffold ID: GOS2226_1031768
• Source Dataset Name: Marine microbial communities from Cape May, New Jersey, USA - GS010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1762
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → unclassified Candidatus Puniceispirillum → Candidatus Puniceispirillum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location

• Location Name: Cape May, New Jersey, USA
• Coordinates
  • Lat. (^o): 38.94
  • Long. (^o): -74.685
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080072	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2226_10317683	F080072	N/A	LDAAAVRQSNDNLLPIRLRSNLHVFLCDSSGVIEPSHQFFRLLVLESNDVLIAQHWQESTEDKAGKSDHPYRSNLSPEMLSVFALASKIGLGADYKL*