NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FAAS_10445471

Scaffold FAAS_10445471


Overview

Basic Information
Taxon OID3300001880 Open in IMG/M
Scaffold IDFAAS_10445471 Open in IMG/M
Source Dataset NameTermite hindgut microbial communities from the Max Planck Institute, Bremen, Germany, analyzing fibers in the hindgut lumen - ASSEMBLED Fiber-Associated Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)550
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Hindgut → Unclassified → Termite Hindgut → Termite Hindgut Microbial Communities From The Max Planck Institute, Bremen, Germany, Analyzing Fibers In The Hindgut Lumen

Source Dataset Sampling Location
Location NameMax Planck Institute, Bremen, Germany
CoordinatesLat. (o)53.109695Long. (o)8.847543Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090568Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
FAAS_104454711F090568GGAGMYYTNEFIDELETKVQLDKVMYANIQAHNVAKMLADDRTMYKMFGVYWWNVKDALRKHVNNKEWYCGVKDEPLMKERGWHGSDFRTMLAAMYYMNEHKVITSDHEWF

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