Scaffold JGI2065J20421_1000162

Overview

Basic Information

• Taxon OID: 3300001865
• Scaffold ID: JGI2065J20421_1000162
• Source Dataset Name: Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 111596
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (76.53%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa

Source Dataset Sampling Location

• Location Name: Lawrence Berkeley National Laboratory, California, USA
• Coordinates
  • Lat. (^o): 37.8754404
  • Long. (^o): -122.2477251

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062236	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI2065J20421_100016227	F062236	GGAG	LERWGKQFAKTVENRIEGQSDFALDLIDSLQQKAEEFNEEFPKNSRFSVAVLSKGEDVEVSNGYKTASAISTRLPGAIFVRVWNNISERSFEAVLHNTPDGFQPDGLPSECSDPEGLAEWMVHEIFEP*