Scaffold JGI24524J20080_1018882

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24524J20080_1018882

Scaffold JGI24524J20080_1018882

Overview

Basic Information
Taxon OID	3300001853 Open in IMG/M
Scaffold ID	JGI24524J20080_1018882 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - LP-49
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	728
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0003	Long. (^o)	-144.9998	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012166	Metagenome	283	Y
F057760	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24524J20080_10188821	F057760	N/A	TKLQTKIAPDVKLSRSQVVKTLVNEKARKLNGXLSX*
JGI24524J20080_10188822	F012166	GAG	MAXLAXXGXFXXXKXTPEEKLWKAVLSQGVYEACSXKYNALPLTYGEMRSALEWVDMYNKDFCDVCSFAGYDPGYIYRKAKNKVNKWLPNGS*

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