Scaffold RCM34_1011574

Overview

Basic Information

• Taxon OID: 3300001843
• Scaffold ID: RCM34_1011574
• Source Dataset Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM34, ROCA_DNA218_2.0um_bLM_C_2b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1975
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Ponta de Pedras, Para, Brazil
• Coordinates
  • Lat. (^o): -1.519367
  • Long. (^o): -48.91795

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034907	Metagenome / Metatranscriptome	173	Y
F054003	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM34_10115741	F034907	N/A	TAIVGGVILATFGVMFYLDDRAGGGLYDPDPSASDRYRRNRK*
RCM34_10115742	F054003	AGGA	MTETLKEYHFDDEQIEFLMRIVRDNAQYEDDEVREWMEELANQIEDQIVNHPTND*