Scaffold ACM56_108281

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ACM56_108281

Scaffold ACM56_108281

Overview

Basic Information
Taxon OID	3300001817 Open in IMG/M
Scaffold ID	ACM56_108281 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM56, ROCA_DNA136_2.0um_27k
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	567
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Amazon River plume to Atlantic Ocean
Coordinates	Lat. (^o)	12.4145	Long. (^o)	-52.2197	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F003869	Metagenome / Metatranscriptome	464	Y

Sequences

Protein ID	Family	RBS	Sequence
ACM56_1082811	F003869	GGAG	MARRQYNRTHYYSIGGMLTDEEVHQVWEIVGNALDRNRVYDETLKKNIVNVIDKSLEVN*
ACM56_1082812	F001479	GGAG	MSKEMLFLCDVLTAWCKQNKLPHRCASDFLYGDDACKLTPNQAYWLESFIATWDVIAEHT

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