Scaffold JGI24649J20148_1008620

Overview

Basic Information

• Taxon OID: 3300001797
• Scaffold ID: JGI24649J20148_1008620
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-81
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 712
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -28.4105
  • Long. (^o): 179.1447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053337	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24649J20148_10086202	F053337	N/A	DWQIEIGADTGTYCAAVAVAVSPEGHALVIDEVTNYRYVANTPELDPDSSILRWCDEVRQMADRWGVRPVAWVDANSQFKVECAHHGLQLLANKRGREVRTEAARQYFQHSQIDLTPWLDMLPYELEHAQWPDRTTAAGKYERLKEHDHVLDCLEHVLSRHPRGRLIKEDRVPPMPGSVQWMGSPLRKRRRRAAVDQHLGAN*