NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24649J20148_1003103

Scaffold JGI24649J20148_1003103


Overview

Basic Information
Taxon OID3300001797 Open in IMG/M
Scaffold IDJGI24649J20148_1003103 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-81
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1753
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-28.4105Long. (o)179.1447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087293Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
JGI24649J20148_10031033F087293N/AYKAKAAVLEAQVTKLENDLRSKNGQRRRDTDRDAELAGIHDTLGALQRVFTLYVEDRKMDMSDEAQVQISRVGQELAQGQATRDWNARYEKEQSRLMSTVQDDSDNILISEDDAQKLQSDWQAAWAKDSKASRGDFEDVINIQIEAAKMVAQEERRRAADERKLLSDEAKNAGKKALEKAGVADLDTGAAIAGGNEELRGSALIERGLRRRNV*

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