Scaffold BP130709S4_1470412

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BP130709S4_1470412

Scaffold BP130709S4_1470412

Overview

Basic Information
Taxon OID	3300001785 Open in IMG/M
Scaffold ID	BP130709S4_1470412 Open in IMG/M
Source Dataset Name	BioPara_130709_S4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	799
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Bioreactor → Biogas Reactor → Biogas Reactor Microbial Communities From The Max Planck Institute, Germany

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014634	Metagenome / Metatranscriptome	261	Y

Sequences

Protein ID	Family	RBS	Sequence
BP130709S4_14704121	F014634	AGGAGG	MKEKIREIFDLEWIRDFAEKNINGTEWIEKDYDGETRKILLIETLVTSQCGAYIPGMVLELFGQAEGYDLEDPYNYEVNATIHDTLMYWEDKINDCLNELLPSKGWYYVGYHEYDGSYCLFYEEYEEEAEQV*

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