3300001785: BioPara_130709_S4

Overview

Basic Information

• IMG/M Taxon OID: 3300001785
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099430 | Gp0055297 | Ga0013021
• Sample Name: BioPara_130709_S4
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 129259412
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae → Shimazuella → Shimazuella kribbensis	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Biogas Reactor Microbial Communities From The Max Planck Institute, Germany
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Grass → Composting → Bioreactor → Biogas Reactor → Biogas Reactor Microbial Communities From The Max Planck Institute, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014634	Metagenome / Metatranscriptome	261	Y
F070019	Metagenome / Metatranscriptome	123	N
F095115	Metagenome / Metatranscriptome	105	Y
F099496	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
BP130709S4_1452980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae → Shimazuella → Shimazuella kribbensis	527
BP130709S4_1454617	All Organisms → cellular organisms → Bacteria	541
BP130709S4_1461876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium	623
BP130709S4_1470412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	799

Sequences

Scaffold ID	Protein ID	Family	Sequence
BP130709S4_1452980	BP130709S4_14529801	F070019	ATTNYMFSSEKEFIEDDKVDFILDLFSKAGKKLDDSVKIVYEHGLEEDGSGGIEDYEVVKYMQFAQNLSYNDYVILNAINEKANLLGIIDELGISKDRLNKSLEILEQNGYIKGFDITRNGKNILKNTNIQVVRTYYRYTVKPGLGDPIIPSSRKFCIQMITENRIYTKKEIDMI
BP130709S4_1454617	BP130709S4_14546172	F095115	MIRTMKKALEYAINKSENPREMKEYIEEYFCTIGGDRRYKLKWRALSGNNKYTFSGIFEFAGHKYYFNKMNGEIELERI*
BP130709S4_1459738	BP130709S4_14597381	F099496	MEHIKEQVKKECDKICGCIYEETRGSIRVYPYTHIITSRLIVAIEMIKKKYDGMVDYCISYDGLRREVYIRFFLIR*
BP130709S4_1461876	BP130709S4_14618761	F095115	MMIETMKKALERAMVKSENPTKIKEYMEEYFDNIGGDRRYKFKWRAICGNHKYTFSGIFEYYGKTYYFNKIGNELELKYYK*
BP130709S4_1470412	BP130709S4_14704121	F014634	MKEKIREIFDLEWIRDFAEKNINGTEWIEKDYDGETRKILLIETLVTSQCGAYIPGMVLELFGQAEGYDLEDPYNYEVNATIHDTLMYWEDKINDCLNELLPSKGWYYVGYHEYDGSYCLFYEEYEEEAEQV*