Scaffold JGI11772J19994_1003847

Overview

Basic Information

• Taxon OID: 3300001748
• Scaffold ID: JGI11772J19994_1003847
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2949
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Etoliko Lagoon, Greece
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007417	Metagenome	351	Y
F067646	Metagenome	125	Y
F072867	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
JGI11772J19994_100384711	F072867	N/A	IQVKSRRATKQNKFIFAAENSRSQSETYKNYHCDILAFVFFYDDQKRIMFKANTSSQNYFTFDKKAITESMELDSLKETLDNLSSVPVLNPII*
JGI11772J19994_10038472	F067646	AGGA	MLEWILYFIAGVFGLVFIGAIISVLAFIYIIRELD*
JGI11772J19994_10038479	F007417	AGG	MRYTLQVQLPSLGWVVAMKTSDLFYMASKRARLIAEGHKVKLIKEKKNG*